nhppSpikeConstSignal: Spike NHPP rate with constant signal strength
In SeqCNVCBS: Scan Statistics for CNV Detection with CBS
Description
Usage
Arguments
Details
Value
Author(s)
See Also
View source: R/nhppSpikeConstSignal.R
Description
Randomly spike the smoothed control rate of an NHPP according to the parameters, with constant signal strength.
Usage
1
nhppSpikeConstSignal(smoothRates, nSpike = 25, cptLenR = 4, cptLenMean = 10, gainRate = 3, lossRate = 0.3, pGain = 0.6)
Arguments
smoothRates
The smoothed rate estimate of the control process
nSpike
Number of signal spikes
cptLenR
Parameter for signal width (parameter R of negative binomial)
cptLenMean
Parameter for signal width (mean width)
gainRate
Relative CN Gain
lossRate
Relative CN Loss
pGain
Proportion of signal regions being CN Gain
Details
The signal width is randomly generated by negative binomial distribution with the two parameters given. This is a more restricted version of nhppSpike
Value
spikeMat
A matrix containing the actual signal spike information
caseRates
The rate of the case PP to be simulated after signal spike
Author(s)
Jeremy J. Shen
See Also
SeqCNVCBS documentation built on May 2, 2019, 6:51 p.m.
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Description Usage Arguments Details Value Author(s) See Also
View source: R/nhppSpikeConstSignal.R
Description
Randomly spike the smoothed control rate of an NHPP according to the parameters, with constant signal strength.
Usage
1 | nhppSpikeConstSignal(smoothRates, nSpike = 25, cptLenR = 4, cptLenMean = 10, gainRate = 3, lossRate = 0.3, pGain = 0.6)
|
Arguments
smoothRates |
The smoothed rate estimate of the control process |
nSpike |
Number of signal spikes |
cptLenR |
Parameter for signal width (parameter R of negative binomial) |
cptLenMean |
Parameter for signal width (mean width) |
gainRate |
Relative CN Gain |
lossRate |
Relative CN Loss |
pGain |
Proportion of signal regions being CN Gain |
Details
The signal width is randomly generated by negative binomial distribution with the two parameters given. This is a more restricted version of nhppSpike
Value
spikeMat |
A matrix containing the actual signal spike information |
caseRates |
The rate of the case PP to be simulated after signal spike |
Author(s)
Jeremy J. Shen
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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