readListInputFile: Read meta file containing list of raw data files

In SeqCNVCBS: Scan Statistics for CNV Detection with CBS

Description

Reads a meta file that contains the file names and type of the data files. See details for the format.

Usage

readListInputFile(inputFilename, sep = "\t")

Arguments

inputFilename	The name of file, containing relevant information of all input files
sep	Delimiter of the meta input file, default is tab-delimited

Details

The meta input file should be organized in a table format with 2 columns, one of which is 'file' and the other is 'type', indicating the data file names and whether the data is from 'normal' or 'tumor'.

Value

normalFiles	A character vector containing the names of files with the normal reads
tumorFiles	A character vector containing the names of files with the tumor reads

Author(s)

Jeremy J. Shen

See Also

readInput, readSeq

Examples

# This shows the format of the meta file
data(JSSim_Meta)
print(JSSim_Meta)

SeqCNVCBS documentation built on May 2, 2019, 6:51 p.m.