SSplotSpawnrecruit: Plot spawner-recruit curve.

Description Usage Arguments Author(s) See Also

View source: R/SSplotSpawnrecruit.R

Description

Plot spawner-recruit curve based on output from Stock Synthesis model.

Usage

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SSplotSpawnrecruit(replist, subplot=1:2, add = FALSE, plot = TRUE,
print = FALSE, xlim = NULL, ylim = NULL, xlab = "Spawning biomass (mt)",
ylab = "Recruitment (1,000s)",
bioscale="default", plotdir = "default",
pwidth = 7, pheight = 7, punits = "in", res = 300, ptsize = 12,
cex.main = 1,  verbose = TRUE, line1 = "blue", line2 = "green3",
line3 = "black", minyr = "default", textmindev = 0.5, ptcol = "red",
virg = TRUE, init = FALSE, forecast = FALSE)

Arguments

replist

list created by SS_output

subplot

vector of which subplots to show. 1=plot without labels, 2=plot with year labels.

add

add to existing plot?

plot

plot to active plot device?

print

print to PNG files?

xlim

optional control of x range

ylim

optional control of y range

xlab

x-axis label

ylab

y-axis label

bioscale

multiplier on spawning biomass, set to 0.5 for single-sex models

plotdir

directory where PNG files will be written. by default it will be the directory where the model was run.

pwidth

width of plot written to PNG file

pheight

height of plot written to PNG file

punits

units for PNG file

res

resolution for PNG file

ptsize

ptsize for PNG file

cex.main

character expansion for plot titles

verbose

report progress to R GUI?

line1

first line color

line2

second line color

line3

third line color

minyr

minimum year of recruitment deviation to show in plot

textmindev

minimum recruitment deviation for label to be added so only extreme devs are labeled (labels are added to first and last years as well). Default=0.7.

ptcol

point color

virg

add point for equilibrium conditions (x=B0,y=R0)

init

add point for initial conditions (x=B1,y=R1)

forecast

include forecast years in the curve?

Author(s)

Ian Stewart, Ian Taylor

See Also

SS_plots, SS_output


r4ss documentation built on May 2, 2019, 4:56 p.m.