SSplotCohorts: Plot cumulative catch by cohort.
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Cumulative catch contributions for each cohort are plotted based on estimated catch-at-age matrix and weight-at-age values by fleet. Curves are shown in units of both numbers and biomass.

SSplotCohorts(replist,subplots=1:2,add=FALSE,
           plot=TRUE,print=FALSE,
           cohortcols="default",
           cohortfrac=1,
           cohortvec=NULL,
           cohortlabfrac=0.1,
           cohortlabvec=NULL,
           lwd=3, 
           plotdir="default",
           xlab="Year",
           labels=c("Age",
             "Cumulative catch by cohort (in numbers x1000)",
             "Cumulative catch by cohort (x1000 mt)"),
           pwidth=7,pheight=7,punits="in",res=300,ptsize=12,
           cex.main=1,
           verbose=TRUE)

`replist`	List created by `SS_output`
`subplots`	Vector controlling which subplots to create
`add`	Add to existing plot? (not yet implemented)
`plot`	Plot to active plot device?
`print`	Print to PNG files?
`cohortcols`	Vector of colors to show for each cohort. Default is range of colors shade indicating time period.
`cohortfrac`	What fraction of the cohorts to include in plot. If value < 1 is used, then cohorts are filtered to only include those with the highest maximum cumulative catch. Value will be overridden by `cohortvec`.
`cohortvec`	Optional vector of birth years for cohorts to include in plot. Value overrides `cohortfrac`.
`cohortlabfrac`	What fraction of the cohorts to label in plot. By default, top 10% of cohorts are labeled. Value will be overridden by `cohortlabvec`.
`cohortlabvec`	Optional vector of birth years for cohorts to label in plot. Value overrides `cohortlabfrac`.
`lwd`	Line width
`plotdir`	Directory where PNG or PDF files will be written. By default it will be the directory where the model was run.
`xlab`	x-label for all plots
`labels`	Vector of labels for plots (titles and axis labels)
`pwidth`	Width of plot written to PNG file
`pheight`	Height of plot written to PNG file
`punits`	Units for PNG file
`res`	Resolution for PNG file
`ptsize`	ptsize for PNG file
`cex.main`	Character expansion for plot titles (no titles in this function yet)
`verbose`	Report progress to R console?