SSplotRecdevs: Plot recruitment deviations
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Plot recruitment deviations and associated quantities including derived measures related to bias adjustment.

SSplotRecdevs(replist, subplots = 1:3,
plot = TRUE, print = FALSE, add = FALSE,
uncertainty = TRUE, forecastplot = FALSE,
col1 = "black", col2 = "blue",
col3 = "green3", col4 = "red", legendloc = "topleft",
labels = c("Year", "Asymptotic standard error estimate",
"Log recruitment deviation",
"Bias adjustment fraction, 1 - stddev^2 / sigmaR^2"),
pwidth = 7, pheight = 7, punits = "in", res = 300, ptsize = 12,
cex.main = 1, plotdir = "default", verbose = TRUE)

`replist`	list created by `SSoutput`
`subplots`	vector controlling which subplots to create
`plot`	plot to active plot device?
`print`	print to PNG files?
`add`	add to existing plot (not yet implemented)
`uncertainty`	include plots showing uncertainty?
`forecastplot`	include points from forecast years?
`col1`	first color used
`col2`	second color used
`col3`	third color used
`col4`	fourth color used
`legendloc`	location of legend. see ?legend for more info
`labels`	vector of labels for plots (titles and axis labels)
`pwidth`	width of plot written to PNG file
`pheight`	height of plot written to PNG file
`punits`	units for PNG file
`res`	resolution for PNG file
`ptsize`	ptsize for PNG file
`cex.main`	character expansion for plot titles
`plotdir`	directory where PNG files will be written. by default it will be the directory where the model was run.
`verbose`	report progress to R GUI?