make_multifig: Create multi-figure plots.
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Function created as an alternative to lattice package for multi-figure plots of composition data and fits from Stock Synthesis output.

make_multifig(ptsx, ptsy, yr, linesx = 0, linesy = 0, ptsSD = 0,
sampsize = 0, effN = 0, showsampsize = TRUE, showeffN = TRUE,
sampsizeround = 1, maxrows = 6, maxcols = 6, rows = 1, cols = 1,
fixdims = TRUE, main = "", cex.main = 1, xlab = "", ylab = "",
size = 1, maxsize = 3, do.sqrt = TRUE, minnbubble = 8, allopen = TRUE,
horiz_lab = "default", xbuffer = c(0.1, 0.1), ybuffer = c(0, 0.15),
ymin0 = TRUE, axis1 = "default", axis2 = "default", linepos = 1,
type = "o", bars = FALSE, barwidth = "default", ptscex = 1, ptscol = 1,
ptscol2 = 1, linescol = 2, lty = 1, lwd = 1, pch = 1, nlegends = 3,
legtext = list("yr","sampsize", "effN"), legx = "default",
legy = "default", legadjx = "default", legadjy = "default",
legsize = c(1.2, 1), legfont = c(2, 1), ipage = 0, scalebins = FALSE)

`ptsx`	vector of x values for points or bars
`ptsy`	vector of y values for points or bars of same length as ptsx
`yr`	vector of category values (years) of same length as ptsx
`linesx`	optional vector of x values for lines
`linesy`	optional vector of y values for lines
`ptsSD`	optional vector of standard deviations used to plot error bars on top of each point under the assumption of normally distributed error
`sampsize`	optional sample size vector of same length as ptsx
`effN`	optional effective sample size vector of same length as ptsx
`showsampsize`	show sample size values on plot?
`showeffN`	show effective sample size values on plot?
`sampsizeround`	rounding level for sample size values
`maxrows`	maximum (or fixed) number or rows of panels in the plot
`maxcols`	maximum (or fixed) number or columns of panels in the plot
`rows`	number or rows to return to as default for next plots to come or for single plots
`cols`	number or cols to return to as default for next plots to come or for single plots
`fixdims`	fix the dimensions at maxrows by maxcols or resize based on number of elements in `yr` input.
`main`	title of plot
`cex.main`	character expansion for title
`xlab`	x-axis label
`ylab`	y-axis label
`size`	vector of bubbles sizes if making a bubble plot
`maxsize`	maximum size of bubbles
`do.sqrt`	scale bubbles based on sqrt of size vector. see ?bubble3 for more info.
`minnbubble`	number of unique x values before adding buffer. see ?bubble3 for more info.
`allopen`	should all bubbles be open? see ?bubble3 for more info.
`horiz_lab`	axis labels set horizontal all the time (TRUE), never (FALSE) or only when relatively short ("default")
`xbuffer`	extra space around points on the left and right as fraction of total width of plot
`ybuffer`	like xbuffer
`ymin0`	fix minimum y-value at 0?
`axis1`	position of bottom axis values
`axis2`	position of left size axis values
`linepos`	should lines be added on top of points (linepos=1) or behind (linepos=2)?
`type`	type of line/points used for observed values (see 'type' in ?plot for details) on top of a grey polygon. Default is "o" for overplotting points on lines.
`bars`	should the ptsx/ptsy values be bars instead of points (TRUE/FALSE)
`barwidth`	width of bars in barplot, default method chooses based on quick and dirty formula also, current method of plot(...type='h') could be replaced with better approach
`ptscex`	character expansion factor for points (default=1)
`ptscol`	color for points/bars
`ptscol2`	color for negative value points in bubble plots
`linescol`	color for lines
`lty`	line type
`lwd`	line width
`pch`	point character type
`nlegends`	number of lines of text to add as legends in each plot
`legtext`	text in legend, a list of length=nlegends. values may be any of 1. "yr", 2. "sampsize", 3. "effN", or a vector of length = ptsx.
`legx`	vector of length=nlegends of x-values of legends (default is first one on left, all after on right)
`legy`	vector of length=nlegends of y-values of legends (default is top for all plots)
`legadjx`	left/right adjustment of legends around legx
`legadjy`	left/right adjustment of legends around legy
`legsize`	font size for legends. default=c(1.2,1.0) (larger for year and normal for others)
`legfont`	font type for legends, same as "font" under ?par
`ipage`	which page of plots when covering more than will fit within maxrows by maxcols.
`scalebins`	Rescale expected and observed proportions by dividing by bin width for models where bins have different widths? Caution!: May not work correctly in all cases.