SSplotBiology: Plot biology related quantities.

In r4ss: R code for Stock Synthesis

Description

Plot biology related quantities from Stock Synthesis model output, including mean weight, maturity, fecundity, and spawning output.

Usage

SSplotBiology(replist,
 plot=TRUE,print=FALSE,add=FALSE,subplots=1:10,seas=1,
 col1="red",col2="blue",
 legendloc="topleft",
 plotdir="default",
 labels=c("Length (cm)",               
   "Age (yr)",                         
   "Maturity",                         
   "Mean weight (kg) in last year",    
   "Spawning output",                  
   "Length (cm, middle of the year)",  
   "Natural mortality",                
   "Female weight (kg)",               
   "Female length (cm)",               
   "Fecundity",                        
   "Default fecundity label"),         
 pwidth=7,pheight=7,punits="in",res=300,ptsize=12,cex.main=1,
 verbose=TRUE)

Arguments

replist	List created by SS_output
plot	Plot to active plot device?
print	Print to PNG files?
add	add to existing plot
subplots	vector controlling which subplots to create
seas	which season to plot (obviously only works in seasonal models, but maybe not fully implemented even then)
col1	color of some points/lines
col2	color of other points/lines
legendloc	Location of legend (see ?legend for more info)
plotdir	Directory where PNG files will be written. by default it will be the directory where the model was run.
labels	Vector of labels for plots (titles and axis labels)
pwidth	Width of plot written to PNG file
pheight	Height of plot written to PNG file
punits	Units for PNG file
res	Resolution for PNG file
ptsize	Point size for PNG file
cex.main	Character expansion for plot titles
verbose	Return updates of function progress to the R GUI?

Author(s)

Ian Stewart, Ian Taylor

See Also

SS_plots, SS_output

r4ss documentation built on May 2, 2019, 4:56 p.m.