SSplotCatch: Plot catch related quantities.
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Plot catch related quantities from Stock Synthesis output. Plots include harvest rate, continuous F, landings, and discard fraction.

SSplotCatch(replist, subplots = 1:15, add = FALSE, areas = 1,
plot = TRUE, print = FALSE, type = "l", fleetlty = 1,
fleetpch = 1, fleetcols = "default", fleetnames = "default", lwd = 3,
areacols = "default", areanames = "default", minyr = NULL, maxyr = NULL,
annualcatch = TRUE, forecastplot = TRUE, plotdir = "default",
showlegend = TRUE, legendloc = "topleft", xlab = "Year",
labels = c("Harvest rate/Year", "Continuous F", "Landings",
"Total catch", "Predicted Discards", "Discard fraction", "(mt)",
"(numbers x1000)", "Observed and expected",
"aggregated across seasons"),
catchasnumbers = NULL, catchbars = TRUE, pwidth = 7, pheight = 7,
punits = "in", res = 300, ptsize = 12, cex.main = 1, verbose = TRUE)

`replist`	List created by `SS_output`
`subplots`	Vector controlling which subplots to create
`add`	Add to existing plot? (not yet implemented)
`areas`	Optional subset of areas to plot for spatial models
`plot`	Plot to active plot device?
`print`	Print to PNG files?
`type`	Type parameter passed to plot function. Default "l" is lines only. Other options include "o" for overplotting points on lines.
`fleetlty`	Vector of line type by fleet
`fleetpch`	Vector of plot character by fleet
`fleetcols`	Vector of colors by fleet
`fleetnames`	Optional replacement for fleenames used in data file
`lwd`	Line width
`areacols`	Vector of colors by area. Default uses rich.colors by Arni Magnusson
`areanames`	Names for areas. Default is to use Area1, Area2,...
`minyr`	Optional input for minimum year to show in plots
`maxyr`	Optional input for maximum year to show in plots
`annualcatch`	Include plot of catch aggregated across seasons within each year
`forecastplot`	Add points from forecast years
`plotdir`	Directory where PNG or PDF files will be written. By default it will be the directory where the model was run.
`showlegend`	Put legend on plot
`legendloc`	Location of legend (see ?legend for more info)
`xlab`	x-label for all plots
`labels`	Vector of labels for plots (titles and axis labels)
`catchasnumbers`	Is catch in numbers instead of biomass? Should be set automatically if set to NULL. If fleets include a mix of biomass and numbers, then catch plots should be interpreted carefully.
`catchbars`	Show catch by fleet as barplot instead of stacked polygons? (default=TRUE)
`pwidth`	Width of plot written to PNG file
`pheight`	Height of plot written to PNG file
`punits`	Units for PNG file
`res`	Resolution for PNG file
`ptsize`	ptsize for PNG file
`cex.main`	Character expansion for plot titles
`verbose`	Report progress to R console?