SSplotNumbers: Plot numbers-at-age related data and fits.
In r4ss: R code for Stock Synthesis

Description Usage Arguments Author(s) See Also

Plot numbers-at-age related data and fits from Stock Synthesis output. Plots include bubble plots, mean age, equilibrium age composition, sex-ratio, and ageing imprecision patterns.

SSplotNumbers(replist, subplots = 1:9, plot = TRUE, print = FALSE,
areas = "all", areanames = "default", areacols = "default",
pntscalar = 2.6, period = c("B","M"), add = FALSE,
labels=c("Year",                    
  "Age",                            
  "True age (yr)",                  
  "SD of observed age (yr)",        
  "Mean observed age (yr)",         
  "Mean age (yr)",                  
  "mean age in the population",     
  "Ageing imprecision",             
  "Numbers at age at equilibrium",  
  "Equilibrium age distribution",   
  "Sex ratio of numbers at age (males/females)",
  "Length",                         
  "Mean length (cm)",               
  "mean length (cm) in the population",
  "expected numbers at age",       
  "Beginning of year",             
  "Middle of year",                
  "expected numbers at length",    
  "Sex ratio of numbers at length (males/females)",
  "Sex ratio of numbers at length (females/males)"),
pwidth = 7, pheight = 7, punits = "in", res = 300,
ptsize = 12, cex.main = 1, plotdir = "default", verbose = TRUE)

`replist`	list created by `SSoutput`
`subplots`	vector controlling which subplots to create
`plot`	plot to active plot device?
`print`	print to PNG files?
`areas`	optional subset of areas to plot for spatial models
`areanames`	names for areas. Default is to use Area1, Area2,...
`areacols`	vector of colors by area
`pntscalar`	maximum bubble size for bubble plots; each plot scaled independently based on this maximum size and the values plotted. Often some plots look better with one value and others with a larger or smaller value. Default=2.6
`period`	indicator of whether to make plots using numbers at age just from the beginning ("B") or middle of the year ("M") (new option starting with SSv3.11)
`add`	add to existing plot? (not yet implemented)
`labels`	vector of labels for plots (titles and axis labels)
`pwidth`	width of plot written to PNG file
`pheight`	height of plot written to PNG file
`punits`	units for PNG file
`res`	resolution for PNG file
`ptsize`	ptsize for PNG file
`cex.main`	character expansion for plot titles
`plotdir`	directory where PNG files will be written. by default it will be the directory where the model was run.
`verbose`	report progress to R GUI?