AICgmyc | Calculate AIC values for GMYC objects |
baseContent | Base composition analysis of an alignment |
best2nullLRT | Calculate likelihood ratio tests on GMYC objects |
branchesFromNode | Return the indices of branches descending from a given node |
branches.per.tip | Branches leading to each tip |
carpophilus | Sequence alignments of _Carpophilus_ species |
clustCI.gmyc | Calculate GMYC statistics |
clustGMYC | Create a species vector from a GMYC object |
col2string | Converts R colous names to RGB strings |
compList | Compares two lists |
compVectorDist | Calculate composition vector distance |
DNAccf | Cross-correlation of DNA sequences |
doloGMYC | GMYC results from New Zealand _Dolomedes_ species |
enzymes | Data frame of restriction endonuclease enzyme names and... |
exCon | Evaluation of sequence contamination |
homoP | Homopolymers in DNA sequences |
IDunknown | Identifies unknown sequences by comparison against a local... |
narrowingWindow | Make all sequences the same length |
nodeDesc | Return the descendants of nodes |
nodeRect | Plots rectangles on nodes |
nucDiagExptl | Experimental nucleotide diagnostic function for species... |
permDNA | Permutation of DNA sequences |
phylo2MRP | Create a matrix representing a tree |
pindel | DNA distance model incorporating alignment gaps |
plot.simRFLP | Plot an 'simRFLP' object |
salticidae | Cytochrome oxidase I (COI) sequences of world-wide species of... |
satPlot | Saturation plots |
screeline | Number of clusters over a range of thresholds |
search.GB | Searches for and downloads DNA sequences from GenBank |
seeSegSites | Visualise the informative sites of an alignment |
simRFLP | Simulation of Restriction Fragment Length Polymorphism... |
sppEdge | Returns |
tclust2sppVector | Creates a species vector from the results of tclust. |
tipToRootDist | Distance from root to tip |
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