screeline: Number of clusters over a range of thresholds
In spiderDev: Species Identity and Evolution in R--development

Description Usage Arguments Value Author(s) See Also Examples

Cross-correlation between sequences in an alignment to detect potentially incorrectly aligned sequences.

1	screeline(distObj, breaks = 20)

`distObj`	An object of class `DNAbin`
`breaks`	The number of thresholds at which the number of clusters should be calculated. Default of 20.

Returns a list with the following elements:

`x`	The threshold value.
`y`	The number of clusters in the data at that threshold.

Samuel Brown <s_d_j_brown@hotmail.com>

tclust

data(dolomedes)
doloDist <- dist.dna(dolomedes, model = "raw")

screeline(doloDist)
plot(screeline(doloDist), type = "l", xlab = "Threshold", ylab = "Number of clusters")
plot(screeline(doloDist, breaks = 30), type = "l", xlab = "Threshold", ylab = "Number of clusters")