plot.simRFLP: Plot an 'simRFLP' object
In spiderDev: Species Identity and Evolution in R--development

Description Usage Arguments Details Value Author(s) See Also Examples

Plots an ordination of the Principal Components Analysis conducted by simRFLP.

1 2	## S3 method for class 'simRFLP' plot(x, sppcol = NULL, linecol = "grey25", linewex = 0.4, ...)

`x`	An object of class ‘simRFLP’.
`sppcol`	Used to plot differently coloured lines for each species. The species vector (see `sppVector`) can be used.
`linecol`	Colour that lines should be coloured. Ignored if `sppcol` is given.
`linewex`	Width of each band. Default of 0.4.
`...`	Other arguments to be passed to `plot`.

sppcol can be given as character or numeric vectors. The latter is useful if the default palette is not suitable.

Plots a depiction of the fragment lengths resulting from the RFLP analysis conducted using simRFLP.

Samuel Brown <s_d_j_brown@hotmail.com>

simRFLP.

data(dolomedes)
doloSpp <- substr(dimnames(dolomedes)[[1]], 1, 5)

doloRFLP <- simRFLP(dolomedes, "Alu1")

plot(doloRFLP)
plot(doloRFLP, sppcol = doloSpp)
plot(doloRFLP, sppcol = as.numeric(as.factor(doloSpp))*10)
plot(doloRFLP, linewex = 0.1)