seeSegSites: Visualise the informative sites of an alignment

In spiderDev: Species Identity and Evolution in R--development

Description

This function visualises illustrative barcode consisting of vertical bands in four colours corresponding to the DNA bases adenine (A), cytosine (C), guanine (G) and thiamine (T).

Usage

seeSegSites(DNAbin, col = c("#C8CAD8", "#023FA5"))

Arguments

DNAbin	An alignment DNAbin.
col	A character vector of length 2 giving colours to represent invariant and variable sites.

Value

Plots an visualisation of the informative sites in an alignment.

Author(s)

Samuel Brown <[e-mail]>

See Also

seeBarcode

Examples

data(carpophilus)

layout(matrix(c(1:2), ncol = 1))
seeSegSites(carpoCOI)
seeSegSites(carpoITS)

seeSegSites(carpoCOI, col = c("red", "orange"))
seeSegSites(carpoITS, col = c("red", "orange"))

spiderDev documentation built on May 2, 2019, 5:23 p.m.