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baseContent: Base composition analysis of an alignment

baseContent: Base composition analysis of an alignment
In spiderDev: Species Identity and Evolution in R--development

Description Usage Arguments Value Author(s) See Also Examples

View source: R/baseContent.R

Description

Base composition analysis of an alignment.

Usage

1
baseContent(DNAbin)

Arguments

DNAbin

An object of class DNAbin

Value

Returns a numeric vector of the log probability of the base composition of the query sequence, based on the global base composition of all other sequences in the alignment.

Author(s)

Samuel Brown <s_d_j_brown@hotmail.com>

See Also

dmultinom

Examples

1
2
3
data(carpophilus)
baseContent(carpoCOI)
plot(baseContent(carpoCOI))

spiderDev documentation built on May 2, 2019, 5:23 p.m.

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