Read count and CNV profile

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Description

Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

1
plotProfile(model, both.strands = FALSE, plot.SCE = TRUE, file = NULL)

Arguments

model

A aneuHMM object or binned.data.

both.strands

If TRUE, strands will be plotted separately.

plot.SCE

Logical indicating whether SCE events should be plotted.

file

A PDF file where the plot will be saved.

Value

A ggplot object or NULL if a file was specified.

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