plotProfile: Read count and CNV profile

Description Usage Arguments Value

View source: R/plotting.R

Description

Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

1
2
plotProfile(model, both.strands = FALSE, plot.SCE = TRUE, file = NULL,
  normalize.counts = NULL)

Arguments

model

A aneuHMM object or binned.data.

both.strands

If TRUE, strands will be plotted separately.

plot.SCE

Logical indicating whether breakpoints should be plotted.

file

A PDF file where the plot will be saved.

normalize.counts

An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc.

Value

A ggplot object or NULL if a file was specified.


AneuFinder documentation built on May 20, 2017, 9:15 p.m.

Search within the AneuFinder package
Search all R packages, documentation and source code