plotProfile: Read count and CNV profile

In AneuFinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Description

Plot a profile with read counts and CNV-state from a aneuHMM object or binned.data.

Usage

plotProfile(model, both.strands = FALSE, plot.breakpoints = FALSE,
  file = NULL, normalize.counts = NULL)

Arguments

model	A aneuHMM object or binned.data.
both.strands	If TRUE, strands will be plotted separately.
plot.breakpoints	Logical indicating whether breakpoints should be plotted.
file	A PDF file where the plot will be saved.
normalize.counts	An character giving the copy number state to which to normalize the counts, e.g. '1-somy', '2-somy' etc.

Value

A ggplot object or NULL if a file was specified.

AneuFinder documentation built on Nov. 8, 2020, 7:44 p.m.