exportVisualizationFragmentData: Export near-cis fragment data of a 'Data4Cseq' object

In Basic4Cseq: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Description

This function is a simple helper function that writes the near-cis data of a Data4Cseq object as tab-separated file to hard disk.

Usage

exportVisualizationFragmentData(expData, fileName, fullData = FALSE)

Arguments

expData	Experiment data of class Data4Cseq information on the 4C-seq experiment, including visualization data
fileName	Name for the tab-separated file
fullData	If TRUE, the function exports the full fragment data (including fragment end length etc). If FALSE, only the minimum fragment information is exported, i.e. chromosome, start, end and (normalized) read count.

Value

A tab-separated file containing near-cis framgent data of a Data4Cseq object

Author(s)

Carolin Walter

Examples

    if(interactive()) {
        data(liverData)
        exportVisualizationFragmentData(liverData, "fetalLiverData.csv")
    }

Basic4Cseq documentation built on Nov. 8, 2020, 6:53 p.m.