liverDataRaw: Example 4C-seq data set of fetal liver data

In Basic4Cseq: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Description

This data set contains an instance of a Data4Cseq object; 2185 reads on 453 fragments are included. Raw reads are mapped to fragments, but the read count has not yet been normalized.

The 4C-seq data was taken from Stadhouders et al's fetal liver data set.

Usage

    data("liverDataRaw")

Format

Formal class 'Data4Cseq'

Source

Shortened version of Stadhouders et al's fetal liver data:

Stadhouders, R., Thongjuea, S., et al. (2012): Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. EMBO, 31, 986-999.

Examples

    data("liverDataRaw")
    liverDataRaw

Basic4Cseq documentation built on Nov. 8, 2020, 6:53 p.m.