normalizeFragmentData: Normalize near-cis fragment data read count

Description Usage Arguments Value Author(s) Examples

Description

This function provides a simple RPM (reads per million) normalization for near-cis fragment data read counts of a Data4Cseq object. A form of normalization is especially important for the comparison of samples with a different read count.

Usage

1

Arguments

expData

Experiment data of class Data4Cseq with information on the 4C-seq experiment

Value

Data frame with RPM-normalized data

Author(s)

Carolin Walter

Examples

1
2
3
    data(liverDataRaw)
    normalizedFragments<-normalizeFragmentData(liverDataRaw)
    head(normalizedFragments)

Basic4Cseq documentation built on Nov. 8, 2020, 6:53 p.m.