printBEDFragmentLibrary: Print a BED-file fragment library
In Basic4Cseq: Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Description Usage Arguments Value Author(s) Examples

This function extracts the first columns of a virtual fragment library file and exports them as a BED-file for use with other tools (e.g. visualization in the Integrative Genomics Viewer (IGV).)

1	printBEDFragmentLibrary(fragmentLibrary, BEDLibraryName, minFragEndLength = 0, zeroBased = FALSE)

`fragmentLibrary`	Virtual fragment library file name
`BEDLibraryName`	File name for the exported BED file
`minFragEndLength`	Minimum fragment end length to be considered
`zeroBased`	If TRUE, adapt the start of the BED-file fragments

writes BED-file containing the virtual fragment library position data

Carolin Walter

    if(interactive()) {
        file <- system.file("extdata", "vfl_aagctt_catg_mm9_54_vp.csv", package="Basic4Cseq")
        printBEDFragmentLibrary(file, "BEDLibrary_FL_vp.bed")
    }