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#' @title generate gene expression calls with BgeeCall
#'
#' @keywords RNA-Seq, abundance quantification, present/absent calls
#'
#' @description BgeeCall allows to generate present/absent gene expression calls without
#' using an arbitrary cutoff like TPM<1. Calls are generated based on reference intergenic
#' sequences. These sequences are generated based on expression of all RNA-Seq libraries
#' of each species integrated in Bgee (https://bgee.org).
#'
#' @details Thes most important functions are :
#' \itemize{
#' \item generate_calls_workflow : generate present/absent calls on a computer
#' \item generate_slurm_indexes : generate kallisto indexes for a list of libraries
#' on a cluster with slurm queuing system.
#' \item generate_slurm_calls : generate present/absent calls for a list of libraries
#' on a cluster with slurm queuing system. Indexes have to be generated first with the function
#' `generate_slurm_indexes`
#' }
#' For more details please have a look at the vignette with the command \strong{vignette("BgeeCall")}
#'
#' @seealso https://github.com/BgeeDB/BgeeCall
#'
#' @author Julien Wollbrett
#'
#' @docType package
#' @name BgeeCall
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