API for BioMedR
Generating Various Molecular Representations for Chemicals, Proteins, DNAs/RNAs and Their Interactions
| Global functions | |
|---|---|
| AA2DACOR | Man page |
| AA3DMoRSE | Man page |
| AAACF | Man page |
| AABLOSUM100 | Man page |
| AABLOSUM45 | Man page |
| AABLOSUM50 | Man page |
| AABLOSUM62 | Man page |
| AABLOSUM80 | Man page |
| AABurden | Man page |
| AACPSA | Man page |
| AAConn | Man page |
| AAConst | Man page |
| AADescAll | Man page |
| AAEdgeAdj | Man page |
| AAEigIdx | Man page |
| AAFGC | Man page |
| AAGETAWAY | Man page |
| AAGeom | Man page |
| AAInfo | Man page |
| AAMOE2D | Man page |
| AAMOE3D | Man page |
| AAMetaInfo | Man page |
| AAMolProp | Man page |
| AAPAM120 | Man page |
| AAPAM250 | Man page |
| AAPAM30 | Man page |
| AAPAM40 | Man page |
| AAPAM70 | Man page |
| AARDF | Man page |
| AARandic | Man page |
| AATopo | Man page |
| AATopoChg | Man page |
| AAWHIM | Man page |
| AAWalk | Man page |
| AAindex | Man page |
| Autocorrelation | Man page |
| BMDrugMolCAS | Man page Source code |
| BMgetDNAGenBank | Man page Source code |
| BMgetDrug | Man page Source code |
| BMgetDrugMolChEMBL | Man page Source code |
| BMgetDrugMolDrugBank | Man page Source code |
| BMgetDrugMolKEGG | Man page Source code |
| BMgetDrugMolPubChem | Man page Source code |
| BMgetDrugSmiChEMBL | Man page Source code |
| BMgetDrugSmiDrugBank | Man page Source code |
| BMgetDrugSmiKEGG | Man page Source code |
| BMgetDrugSmiPubChem | Man page Source code |
| BMgetProt | Man page Source code |
| BMgetProtFASTAKEGG | Man page Source code |
| BMgetProtFASTAUinProt | Man page Source code |
| BMgetProtPDBRCSBPDB | Man page Source code |
| BMgetProtSeqKEGG | Man page Source code |
| BMgetProtSeqRCSBPDB | Man page Source code |
| BMgetProtSeqUniProt | Man page Source code |
| BioMedR | Man page |
| BioMedR-package | Man page |
| Constitutional | Man page |
| IncDiv | Man page |
| NNeighbors | Man page Source code |
| OptAA3d | Man page |
| acc | Man page Source code |
| apfp | Man page |
| atomprop | Man page |
| bcl | Man page |
| calcDrugFPSim | Man page Source code |
| calcDrugMCSSim | Man page Source code |
| calcParProtGOSim | Man page Source code |
| calcParProtSeqSim | Man page Source code |
| calcSeqPairSim | Source code |
| calcTwoProtGOSim | Man page Source code |
| calcTwoProtSeqSim | Man page Source code |
| calcgoPairSim | Source code |
| checkDNA | Man page Source code |
| checkProt | Man page Source code |
| clusterCMP | Man page Source code |
| clusterJP | Man page Source code |
| clusterMDS | Man page Source code |
| clusterStat | Man page Source code |
| connectivity | Man page |
| convAPtoFP | Man page Source code |
| convSDFtoAP | Man page Source code |
| diversity | Man page Source code |
| extrDNADAC | Man page Source code |
| extrDNADACC | Man page Source code |
| extrDNADCC | Man page Source code |
| extrDNAIncDiv | Man page Source code |
| extrDNAPseDNC | Man page Source code |
| extrDNAPseKNC | Man page Source code |
| extrDNATAC | Man page Source code |
| extrDNATACC | Man page Source code |
| extrDNATCC | Man page Source code |
| extrDNAkmer | Man page Source code |
| extrDrugAIO | Man page Source code |
| extrDrugALOGP | Man page Source code |
| extrDrugAP | Man page Source code |
| extrDrugAminoAcidCount | Man page Source code |
| extrDrugApol | Man page Source code |
| extrDrugAromaticAtomsCount | Man page Source code |
| extrDrugAromaticBondsCount | Man page Source code |
| extrDrugAtomCount | Man page Source code |
| extrDrugAutocorrelationMass | Man page Source code |
| extrDrugAutocorrelationPolarizability | Man page Source code |
| extrDrugAutocorrelationcharge | Man page Source code |
| extrDrugBCUT | Man page Source code |
| extrDrugBPol | Man page Source code |
| extrDrugBondCount | Man page Source code |
| extrDrugCPSA | Man page Source code |
| extrDrugCarbonTypes | Man page Source code |
| extrDrugChiChain | Man page Source code |
| extrDrugChiCluster | Man page Source code |
| extrDrugChiPath | Man page Source code |
| extrDrugChiPathCluster | Man page Source code |
| extrDrugECI | Man page Source code |
| extrDrugEstate | Man page Source code |
| extrDrugEstateComplete | Man page Source code |
| extrDrugExtended | Man page Source code |
| extrDrugExtendedComplete | Man page Source code |
| extrDrugFMF | Man page Source code |
| extrDrugFragmentComplexity | Man page Source code |
| extrDrugGraph | Man page Source code |
| extrDrugGraphComplete | Man page Source code |
| extrDrugGravitationalIndex | Man page Source code |
| extrDrugHBondAcceptorCount | Man page Source code |
| extrDrugHBondDonorCount | Man page Source code |
| extrDrugHybridization | Man page Source code |
| extrDrugHybridizationComplete | Man page Source code |
| extrDrugHybridizationRatio | Man page Source code |
| extrDrugIPMolecularLearning | Man page Source code |
| extrDrugKR | Man page Source code |
| extrDrugKRComplete | Man page Source code |
| extrDrugKappaShapeIndices | Man page Source code |
| extrDrugKierHallSmarts | Man page Source code |
| extrDrugLargestChain | Man page Source code |
| extrDrugLargestPiSystem | Man page Source code |
| extrDrugLengthOverBreadth | Man page Source code |
| extrDrugLogP | Man page Source code |
| extrDrugLongestAliphaticChain | Man page Source code |
| extrDrugMACCS | Man page Source code |
| extrDrugMACCSComplete | Man page Source code |
| extrDrugMDE | Man page Source code |
| extrDrugMannholdLogP | Man page Source code |
| extrDrugMomentOfInertia | Man page Source code |
| extrDrugOBFP2 | Man page Source code |
| extrDrugOBFP3 | Man page Source code |
| extrDrugOBFP4 | Man page Source code |
| extrDrugPetitjeanNumber | Man page Source code |
| extrDrugPetitjeanShapeIndex | Man page Source code |
| extrDrugPubChem | Man page Source code |
| extrDrugPubChemComplete | Man page Source code |
| extrDrugRotatableBondsCount | Man page Source code |
| extrDrugRuleOfFive | Man page Source code |
| extrDrugShortestPath | Man page Source code |
| extrDrugShortestPathComplete | Man page Source code |
| extrDrugStandard | Man page Source code |
| extrDrugStandardComplete | Man page Source code |
| extrDrugTPSA | Man page Source code |
| extrDrugVABC | Man page Source code |
| extrDrugVAdjMa | Man page Source code |
| extrDrugWHIM | Man page Source code |
| extrDrugWeight | Man page Source code |
| extrDrugWeightedPath | Man page Source code |
| extrDrugWienerNumbers | Man page Source code |
| extrDrugZagrebIndex | Man page Source code |
| extrPCMBLOSUM | Man page Source code |
| extrPCMDescScales | Man page Source code |
| extrPCMFAScales | Man page Source code |
| extrPCMMDSScales | Man page Source code |
| extrPCMPropScales | Man page Source code |
| extrPCMScaleGap | Man page Source code |
| extrPCMScales | Man page Source code |
| extrProtAAC | Man page Source code |
| extrProtAPAAC | Man page Source code |
| extrProtCTDC | Man page Source code |
| extrProtCTDCClass | Man page Source code |
| extrProtCTDD | Man page Source code |
| extrProtCTDDClass | Man page Source code |
| extrProtCTDT | Man page Source code |
| extrProtCTDTClass | Man page Source code |
| extrProtCTriad | Man page Source code |
| extrProtCTriadClass | Man page Source code |
| extrProtDC | Man page Source code |
| extrProtFPGap | Man page Source code |
| extrProtGeary | Man page Source code |
| extrProtMoran | Man page Source code |
| extrProtMoreauBroto | Man page Source code |
| extrProtPAAC | Man page Source code |
| extrProtPSSM | Man page Source code |
| extrProtPSSMAcc | Man page Source code |
| extrProtPSSMFeature | Man page Source code |
| extrProtQSO | Man page Source code |
| extrProtSOCN | Man page Source code |
| extrProtTC | Man page Source code |
| geometric | Man page |
| getCCI | Man page Source code |
| getCCICombine | Source code |
| getCCIEntry | Source code |
| getCCITensor | Source code |
| getCDI | Man page Source code |
| getCDICombine | Source code |
| getCDITensor | Source code |
| getCDIinner | Source code |
| getCPI | Man page Source code |
| getCPICombine | Source code |
| getCPITensor | Source code |
| getDDI | Man page Source code |
| getDDICombine | Source code |
| getDDIEntry | Source code |
| getDDITensor | Source code |
| getDPI | Man page Source code |
| getDPICombine | Source code |
| getDPITensor | Source code |
| getDPIinner | Source code |
| getDrug | Man page |
| getPPI | Man page Source code |
| getPPICombine | Source code |
| getPPIEntry | Source code |
| getPPITensor | Source code |
| getProt | Man page |
| goPairSim | Source code |
| id_x_s | Man page Source code |
| make_kmer_index | Man page Source code |
| nner | Source code |
| parGOSim | Man page Source code |
| parSeqSim | Man page Source code |
| plotStructure | Man page Source code |
| pls.cv | Man page Source code |
| property | Man page |
| protcheckgap | Source code |
| readFASTA | Man page Source code |
| readMolFromSDF | Man page Source code |
| readMolFromSmi | Man page Source code |
| readPDB | Man page Source code |
| result | Source code Source code |
| revchars | Man page Source code |
| rf.cv | Man page Source code |
| rf.fs | Man page Source code |
| sdfbcl | Man page |
| searchDrug | Man page Source code |
| segProt | Man page Source code |
| seqPairSim | Source code |
| topology | Man page |
| twoGOSim | Man page Source code |
| twoSeqSim | Man page Source code |
