HNF4alpha: Known HNF4alpha binding sequences
In Biostrings: Efficient manipulation of biological strings

Description Details Author(s) References Examples

Seventy one known HNF4alpha binding sequences

A DNAStringSet containing 71 known binding sequences for HNF4alpha.

P. Aboyoun

Ellrott, K., Yang, C., Sladek, F.M., Jiang, T. (2002) "Identifying transcription factor binding sites through Markov chain optimations", Bioinformatics, 18 (Suppl. 2), S100-S109.

1 2	data(HNF4alpha) HNF4alpha

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DNAStringSet object of length 71:
     width seq
 [1]    13 AGTTCAAGGATCA
 [2]    13 GGGGTCAAGGGTT
 [3]    13 AGGGTAAAGGTTG
 [4]    13 GTCACAAAAGTCC
 [5]    13 GGTCCAAAGGGCG
 ...   ... ...
[67]    13 CTTGGAACCGGGG
[68]    13 AGGTCAGGGTCCC
[69]    13 TGTCCAAAGTCCA
[70]    13 TGATCAGACAAAG
[71]    13 AAACCAAAGTTCA