Axt-util: Utility functions related to Axt alignment
In CNEr: CNE Detection and Visualization
Description
Usage
Arguments
Value
Author(s)
Examples
Description
A collection of different functions used to deal with Axt object.
Usage
1
Arguments
object
An Axt object
...
Currently not used.
Value
A table object with the counts of mismatches, insertions, deletions
and the matches of each base.
Author(s)
Ge Tan
Examples
1
2
3
4
axtFilesHg38DanRer10 <- file.path(system.file("extdata", package="CNEr"),
"hg38.danRer10.net.axt")
axtHg38DanRer10 <- readAxt(axtFilesHg38DanRer10)
summary(axtHg38DanRer10)
CNEr documentation built on Nov. 8, 2020, 5:36 p.m.
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Description Usage Arguments Value Author(s) Examples
Description
A collection of different functions used to deal with Axt object.
Usage
1 |
Arguments
object |
An |
... |
Currently not used. |
Value
A table object with the counts of mismatches, insertions, deletions
and the matches of each base.
Author(s)
Ge Tan
Examples
1 2 3 4 | axtFilesHg38DanRer10 <- file.path(system.file("extdata", package="CNEr"),
"hg38.danRer10.net.axt")
axtHg38DanRer10 <- readAxt(axtFilesHg38DanRer10)
summary(axtHg38DanRer10)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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