queryCNEData: Query the CNEData package to fetch the CNEs

Description Usage Arguments Value Author(s)

View source: R/DB.R

Description

Query the CNEData package to fetch the CNEs based on target, query species, winSize and identity.

Usage

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  queryCNEData(dbName, target, query, winSize, identity,
               type=c("target", "all"))

Arguments

dbName

The path of SQLite database.

target, query

The CNEs between target and query species.

winSize, identity

The thresholds of CNEs to fetch on identity over winSize.

type

Which set of CNEs are returned. When it is "all", the CNEs of target always on the left side of returned data.frame.

Value

A data.frame of CNEs coordinates in chr, start, end.

Author(s)

Ge Tan


CNEr documentation built on Nov. 8, 2020, 5:36 p.m.