read.rmskFasta: Read a soft repeat masked fasta
In CNEr: CNE Detection and Visualization
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Examples
Description
Read a soft repeat masked fasta file into a GRanges object.
Usage
1
read.rmskFasta(fn)
Arguments
fn
character(1): The filename of the soft repeat masked fasta.
Details
Only the lower case based ("a", "c", "g", "t") are considered in the
soft repeat masked fasta.
Value
GRanges object with coordinates of repeat masked regions.
Author(s)
Ge Tan
See Also
Examples
1
2
3
fn <- file.path(system.file("extdata", package="CNEr"),
"rmsk.fa")
read.rmskFasta(fn)
CNEr documentation built on Nov. 8, 2020, 5:36 p.m.
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Description Usage Arguments Details Value Author(s) See Also Examples
Description
Read a soft repeat masked fasta file into a GRanges object.
Usage
1 | read.rmskFasta(fn)
|
Arguments
fn |
|
Details
Only the lower case based ("a", "c", "g", "t") are considered in the soft repeat masked fasta.
Value
GRanges object with coordinates of repeat masked regions.
Author(s)
Ge Tan
See Also
Examples
1 2 3 | fn <- file.path(system.file("extdata", package="CNEr"),
"rmsk.fa")
read.rmskFasta(fn)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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