fetchChromSizes: fetchChromSizes function.
In CNEr: CNE Detection and Visualization
Description
Usage
Arguments
Details
Value
Note
Author(s)
Examples
Description
This function tries to automate the fetch of chromosome sizes for assemblies
from UCSC.
Usage
1
fetchChromSizes(assembly)
Arguments
assembly
A character object: the canonical name of assembly,
i.e., ‘hg19’ for UCSC.
Details
This function downloads ‘chromInfo.txt.gz’ from UCSC golden path
for UCSC assemblies.
Value
A object of Seqinfo is returned.
Note
Currently, the assemblies from UCSC are supported.
Author(s)
Ge Tan
Examples
1
2
3
4
fetchChromSizes("hg19")
fetchChromSizes("mm10")
CNEr documentation built on Nov. 8, 2020, 5:36 p.m.
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Description Usage Arguments Details Value Note Author(s) Examples
Description
This function tries to automate the fetch of chromosome sizes for assemblies from UCSC.
Usage
1 | fetchChromSizes(assembly)
|
Arguments
assembly |
A |
Details
This function downloads ‘chromInfo.txt.gz’ from UCSC golden path for UCSC assemblies.
Value
A object of Seqinfo is returned.
Note
Currently, the assemblies from UCSC are supported.
Author(s)
Ge Tan
Examples
1 2 3 4 |
fetchChromSizes("hg19")
fetchChromSizes("mm10")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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