read.rmMask.GRanges: Read a RepeatMasker .out file
In CNEr: CNE Detection and Visualization
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
Read a RepeatMasker .out file into a GRanges object.
Usage
1
Arguments
fn
character(1): the filename of a RepeatMasker .out file.
Value
A GRanges object with metadata columns containing the
name of the matching interspersed repeat,
the class of the repeat and the Smith-Waterman score of the match.
Author(s)
Ge Tan
References
http://www.repeatmasker.org/webrepeatmaskerhelp.html
Examples
1
2
fn <- system.file("extdata", "ce2chrM.fa.out", package="IRanges")
read.rmMask.GRanges(fn)
CNEr documentation built on Nov. 8, 2020, 5:36 p.m.
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Description Usage Arguments Value Author(s) References Examples
Description
Read a RepeatMasker .out file into a GRanges object.
Usage
1 |
Arguments
fn |
|
Value
A GRanges object with metadata columns containing the
name of the matching interspersed repeat,
the class of the repeat and the Smith-Waterman score of the match.
Author(s)
Ge Tan
References
http://www.repeatmasker.org/webrepeatmaskerhelp.html
Examples
1 2 | fn <- system.file("extdata", "ce2chrM.fa.out", package="IRanges")
read.rmMask.GRanges(fn)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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