makeAncoraFiles

Description

Make ancora format files from GRangePairs of CNE

Usage

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  makeAncoraFiles(cne, outputDir = ".", 
                  genomeFirst = "first", genomeSecond = "second",
                  threshold = "50_50")

Arguments

cne

GRangePairs object of CNE.

outputDir

character(1): the output directory of ‘Bed’ and ‘BigWig’ files.

genomeFirst,genomeSecond

character(1): the genome name of the first and second species.

threshold

character(1): the threshold used to identify the CNEs in the format of "50_50" etc

Value

The filenames of output.

Note

This function is mainly for internal use in Lenhard group.

Author(s)

Ge Tan

See Also

readAncora

Examples

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  data(cneFinalListDanRer10Hg38)
  cne <- CNEFinal(cneFinalListDanRer10Hg38[["45_50"]])
  makeAncoraFiles(cne, genomeFirst = "danRer10", genomeSecond = "hg38",
                  threshold = "45_50")

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