makeAncoraFiles: makeAncoraFiles
In CNEr: CNE Detection and Visualization

Description Usage Arguments Value Note Author(s) See Also Examples

Make ancora format files from GRangePairs of CNE

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  makeAncoraFiles(cne, outputDir = ".", 
                  genomeFirst = "first", genomeSecond = "second",
                  threshold = "50_50")

`cne`	`GRangePairs` object of CNE.
`outputDir`	`character`(1): the output directory of ‘Bed’ and ‘BigWig’ files.
`genomeFirst,genomeSecond`	`character`(1): the genome name of the first and second species.
`threshold`	`character`(1): the threshold used to identify the CNEs in the format of "50_50" etc

The filenames of output.

This function is mainly for internal use in Lenhard group.

Ge Tan

readAncora

  data(cneFinalListDanRer10Hg38)
  cne <- CNEFinal(cneFinalListDanRer10Hg38[["45_50"]])
  makeAncoraFiles(cne, genomeFirst = "danRer10", genomeSecond = "hg38",
                  threshold = "45_50")