Files in CNPBayes
Bayesian mixture models for copy number polymorphisms

deprecated.trio.functions.R

DESCRIPTION

NAMESPACE

inst/skewnormal_mix.cpp

inst/simulate_cnvs.org

inst/scripts/simulations.r inst/scripts/run_simulation_hard.R inst/scripts/run_simulation.R inst/scripts/simulate-probes.R inst/scripts/summarizedata.r inst/doc/Convergence.R inst/doc/Overview.Rmd inst/doc/Implementation.Rmd inst/doc/Implementation.pdf inst/doc/Convergence.Rmd inst/doc/Convergence.pdf inst/doc/Implementation.R inst/doc/Overview.R inst/doc/Overview.pdf

inst/extdata/hgTables.txt

inst/extdata/targeted_seq.txt

inst/extdata/mckean_data.rds

inst/extdata/baf.rds

inst/extdata/hapmap.rds

inst/extdata/grl_deletions.rds

inst/extdata/cnv_region.rds

inst/extdata/expr_meth_cn_model.rds

inst/extdata/simulated_se.rds

inst/extdata/DeletionModelExample.rds

vignettes/Overview.Rmd vignettes/Implementation.Rmd

vignettes/references.bib

vignettes/Convergence.Rmd

scripts/cnpb2.sh

scripts/cnpbayes.trio.comparison.batch.dup.R scripts/cnpbayes.trio.comparison.batch.del.R

scripts/cnpb.dup2.sh

scripts/cnpb.sh

scripts/cnpb.dup.sh

scripts/cnp.bayes.quick.test.R scripts/batch.prep.cnpbayes.trios.R scripts/trios_dup.R R/methods-Hyperparameters.R R/data.R R/model_initialization.R R/methods-McmcChains.R R/simulate_data.R R/methods-MultiBatchPooled.R R/help.R R/plot-functions.R R/relabeling.R R/RcppExports.R R/functions.R R/methods-SingleBatchModel.R R/posteriorSimulation-methods.R R/AllClasses.R R/marginal_likelihood.R R/MultiBatchP.R R/gibbs.R R/augment.R R/AllGenerics.R R/genotype_cnps.R R/methods-McmcParams.R R/defunct-functions.R R/methods-SummarizedExperiment.R R/copynumber-models.R R/Cfunctions.R R/MultiBatchList.R R/MultiBatch.R R/coerce-methods.R R/methods-MixtureModel.R R/methods-MultiBatchModel.R R/Defunct-classes.R R/methods-SingleBatchPooled.R R/methods-TrioBatchModel.R

src/miscfunctions.cpp

src/multibatch.h

src/Makevars.win

src/triomodel.cpp

src/multibatch.cpp

src/multibatch_reduced.h

src/RcppExports.cpp

src/miscfunctions.h

src/multibatch_reduced.cpp

src/multibatch_pooledvar.cpp

src/Makevars

src/pooledvar_reduced.cpp

src/multibatch_pooledvar.h

build/vignette.rds

tests/testthat/cnpb.sh

tests/testthat/test_multibatch.R tests/testthat/test_failures.R tests/testthat/test_cnpRegions.R tests/testthat/deletion.script.R tests/testthat/test_loglik.R tests/testthat/test_MultiBatchPooled.R

tests/testthat/cnpb.dup.sh

tests/testthat/test_segfault.R tests/testthat/test_starting_values.R tests/testthat/test_currentExtData.R tests/testthat/test_marginal_likelihood.R tests/testthat/test_Constructors.R tests/testthat/test_copynumber-models.R tests/testthat/duplication.script.R tests/testthat/test_trios.R tests/testthat/test_SingleBatchPooled.R tests/testthat/test_MultiBatchList.R

data/MultiBatchModelExample.rda

data/SingleBatchModelExample.rda

data/MultiBatchPooledExample.rda

CNPBayes documentation built on May 6, 2019, 4:06 a.m.

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CNPBayes
Bayesian mixture models for copy number polymorphisms

Files in CNPBayes
Bayesian mixture models for copy number polymorphisms

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CNPBayes Bayesian mixture models for copy number polymorphisms

Files in CNPBayes Bayesian mixture models for copy number polymorphisms

R Package Documentation

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CNPBayes
Bayesian mixture models for copy number polymorphisms

Files in CNPBayes
Bayesian mixture models for copy number polymorphisms