API for COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells
| Global functions | |
|---|---|
| .COMPASS.discrete | Source code |
| .CellCounts | Source code |
| .CellCounts_character | Source code |
| .CellCounts_numeric | Source code |
| .MakeComparableTwoCOMPASSResults | Source code |
| .needsFlowWorkspace | Source code |
| .onLoad | Source code |
| .polarLegend | Source code |
| .rhat | Source code |
| .toCart | Source code |
| CC | Man page |
| COMPASS | Man page Source code |
| COMPASS-package | Man page |
| COMPASSContainer | Man page Source code |
| COMPASSContainer-data | Man page |
| COMPASSContainerFromGatingSet | Man page Source code |
| COMPASSDescription | Man page Source code |
| COMPASSDescription<- | Man page |
| COMPASSMCMCDiagnosis | Man page Source code |
| COMPASSResult-accessors | Man page |
| COMPASSResult-data | Man page |
| COMPASSfitToCountsTable | Man page Source code |
| CR | Man page |
| CellCounts | Man page Source code |
| CellCounts.COMPASSContainer | Source code |
| CellCounts.default | Source code |
| CellCounts_character | Source code |
| Combinations | Man page Source code |
| FunctionalityScore | Man page Source code |
| FunctionalityScore.COMPASSResult | Man page Source code |
| FunctionalityScore.default | Man page Source code |
| Gamma | Man page Source code |
| GetThresholdedIntensities | Man page Source code |
| MakeComparable | Source code |
| MeanGamma | Man page Source code |
| PolyfunctionalityScore | Man page Source code |
| PolyfunctionalityScore.COMPASSResult | Man page Source code |
| PolyfunctionalityScore.default | Man page Source code |
| Posterior | Man page Source code |
| PosteriorDiff | Man page Source code |
| PosteriorLogDiff | Man page Source code |
| PosteriorPs | Man page Source code |
| PosteriorPu | Man page Source code |
| Response | Man page Source code |
| Response.COMPASSResult | Man page Source code |
| SimpleCOMPASS | Man page Source code |
| TotalCellCounts | Man page Source code |
| UniqueCombinations | Man page Source code |
| UniqueCombinations.COMPASSContainer | Man page Source code |
| UniqueCombinations.default | Man page Source code |
| `metadata<-.COMPASSContainer` | Source code |
| `metadata<-` | Source code |
| categories | Man page Source code |
| checkCOMPASSConvergence | Man page Source code |
| check_meta | Source code |
| clamp | Source code |
| cleanup | Source code |
| compute_posterior | Source code |
| draw_colnames | Source code |
| draw_dendrogram | Source code |
| draw_headerplot | Source code |
| draw_matrix | Source code |
| draw_rownames | Source code |
| getCatsAndSubsetNames | Source code |
| getCounts | Man page Source code |
| lo | Source code |
| markers | Man page Source code |
| markers.COMPASSContainer | Source code |
| markers.COMPASSResult | Source code |
| melt_ | Man page Source code |
| melt_.data.frame | Man page Source code |
| melt_.matrix | Man page Source code |
| merge.COMPASSContainer | Man page Source code |
| mergeMatricesForPlotCOMPASSResultStack | Source code |
| metadata | Man page Source code |
| metadata.COMPASSContainer | Man page Source code |
| metadata.COMPASSResult | Man page Source code |
| metadata<- | Man page |
| metadata<-.COMPASSContainer | Man page |
| pheatmap | Man page |
| plot | Man page |
| plot.COMPASSResult | Man page Source code |
| plot2 | Man page Source code |
| plotCOMPASSResultStack | Man page Source code |
| print.COMPASSContainer | Man page Source code |
| print.COMPASSResult | Man page Source code |
| scores | Man page Source code |
| select_compass_pops | Man page Source code |
| shinyCOMPASS | Man page Source code |
| shinyCOMPASSDeps | Man page Source code |
| stopf | Source code |
| subset.COMPASSContainer | Man page Source code |
| summary.COMPASSContainer | Man page Source code |
| summary.COMPASSResult | Man page Source code |
| swap | Source code |
| translate_marker_names | Man page Source code |
| transpose_list | Man page Source code |
| warnf | Source code |
