COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells

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152
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49
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42
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COMPASS: Combinatorial Polyfunctionality Analysis of Single Cells
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Files in COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells

README.md
NEWS
NAMESPACE
DESCRIPTION
cleanup
build/vignette.rds
src/COMPASS_init.c
src/melt_matrix.c
src/samplePuPs.cpp
src/CellCounts.cpp
src/Makevars.win
src/RcppExports.cpp
src/melt_dataframe.c
src/digamma.c
src/updategammak_noPu.cpp
src/updatealphau_noPu_Exp.cpp
src/utils.c
src/Makevars
src/CellCounts_character.cpp
src/transpose_list.c
src/updatebeta_RW.cpp
src/updatealphau.cpp
src/updatealphas_Exp.cpp
src/mat2vec.c
data/COMPASS.rda
R/transpose_list.R R/check_meta.R R/swap.R R/plotMeanGamma-2.R R/COMPASSResult-methods.R R/Response.R R/RcppExports.R R/utils.R R/shinyCOMPASS.R R/Posterior.R R/TotalCounts.R R/merge-COMPASSContainer.R R/melt_.R R/GetThresholdedIntensities.R R/shinyCOMPASSDeps.R R/Combinations.R R/pheatmap.R R/COMPASS.R R/cleanup.R R/description.R R/COMPASS-package.R R/zzz.R R/subset-COMPASSContainer.R R/UniqueCombinations.R R/COMPASS-discrete.R R/GatingSetToCOMPASS.R R/miscellaneous.R R/CellCounts.R R/SimpleCOMPASS.R R/plotMeanGamma.R R/plotMeanGammaMulti.R R/Rhat.R R/Scores.R R/commonPlot.R R/COMPASSContainer.R R/COMPASS-data.R
vignettes/bibliography.bib
vignettes/SimpleCOMPASS.Rmd
vignettes/SimpleCOMPASS.html
vignettes/COMPASS.Rmd man/COMPASSResult-accessors.Rd man/SimpleCOMPASS.Rd man/merge.COMPASSContainer.Rd man/COMPASS-package.Rd man/markers.Rd man/COMPASSContainer.Rd man/scores.Rd man/pheatmap.Rd man/GetThresholdedIntensities.Rd man/PolyfunctionalityScore.Rd man/checkCOMPASSConvergence.Rd man/select_compass_pops.Rd man/COMPASSDescription.Rd man/subset.COMPASSContainer.Rd man/COMPASS.Rd man/COMPASSfitToCountsTable.Rd man/plot2.Rd man/transpose_list.Rd man/getCounts.Rd man/COMPASSMCMCDiagnosis.Rd man/print.COMPASSResult.Rd man/Combinations.Rd man/CellCounts.Rd man/UniqueCombinations.Rd man/translate_marker_names.Rd man/FunctionalityScore.Rd man/print.COMPASSContainer.Rd man/COMPASSContainerFromGatingSet.Rd man/Response.Rd man/plot.COMPASSResult.Rd man/shinyCOMPASSDeps.Rd man/Posterior.Rd man/shinyCOMPASS.Rd man/metadata.Rd man/melt_.Rd man/COMPASSContainer-data.Rd man/COMPASSResult-data.Rd man/summary.COMPASSResult.Rd man/TotalCellCounts.Rd man/plotCOMPASSResultStack.Rd man/categories.Rd man/summary.COMPASSContainer.Rd tests/test-all.R tests/testthat/test-GatingSet2COMPASS.R tests/testthat/test-FunctionalityScore.R tests/testthat/test-CellCounts.R tests/testthat/helper-init.R tests/testthat/test-COMPASSPlot.R tests/testthat/test-COMPASS.R inst/doc/SimpleCOMPASS.pdf inst/doc/SimpleCOMPASS.Rmd inst/doc/COMPASS.R
inst/doc/COMPASS.html
inst/doc/SimpleCOMPASS.R inst/doc/COMPASS.Rmd inst/shiny/withHelp.R inst/shiny/ui.R
inst/shiny/scripts.js
inst/shiny/server.R inst/shiny/common_functions.R
inst/shiny/www/js/updateSubsets.js
inst/shiny/www/js/shinySplom.js
inst/shiny/www/js/gridsterExtras.js
inst/shiny/www/js/fancyboxify.js
inst/shiny/www/js/d3.js
inst/shiny/www/js/tooltips.js
inst/shiny/www/js/resize.js
inst/shiny/www/multiselect/multiselect.js
inst/shiny/www/multiselect/multiselect.css
inst/shiny/www/jquery-ui/js/jquery-1.9.1.js
inst/shiny/www/jquery-ui/js/jquery-ui-1.10.3.custom.min.js
inst/shiny/www/jquery-ui/js/jquery-ui-1.10.3.custom.js
inst/shiny/www/jquery-ui/css/ui-lightness/jquery-ui-1.10.3.custom.css
inst/shiny/www/jquery-ui/css/ui-lightness/jquery-ui-1.10.3.custom.min.css
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_ffffff_256x240.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_ffd27a_256x240.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_highlight-soft_100_eeeeee_1x100.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_glass_65_ffffff_1x400.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_diagonals-thick_18_b81900_40x40.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_ef8c08_256x240.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_gloss-wave_35_f6a828_500x100.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_glass_100_f6f6f6_1x400.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_flat_10_000000_40x100.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_228ef1_256x240.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/animated-overlay.gif
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_glass_100_fdf5ce_1x400.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_highlight-soft_75_ffe45c_1x100.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-icons_222222_256x240.png
inst/shiny/www/jquery-ui/css/ui-lightness/images/ui-bg_diagonals-thick_20_666666_40x40.png
inst/shiny/www/opentip/opentip.css
inst/shiny/www/opentip/opentip.js
inst/shiny/www/css/styles.css
inst/shiny/www/css/shinySplom.css
inst/extdata/SimpleCOMPASSExample.xlsx
inst/extdata/SimpleCOMPASSExamples.csv
COMPASS documentation built on Nov. 8, 2020, 8:05 p.m.

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