NEWS.md

In ChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

ChIPseeker 1.23.1

• update GEO data (51079/762820 GSM) (2019-12-20, Fri)

ChIPseeker 1.22.0

• Bioconductor 3.10 release

ChIPseeker 1.21.1

• new implementation of upsetplot (2019-08-29, Thu)
• use ggupset, ggimage and ggplotify
• subset method for csAnno object (2019-08-27, Tue)

ChIPseeker 1.20.0

• Bioconductor 3.9 release

ChIPseeker 1.19.1

• add origin_label = "TSS" parameter to plotAvgProf (2018-12-12, Wed)
• https://github.com/GuangchuangYu/ChIPseeker/issues/91

ChIPseeker 1.18.0

• Bioconductor 3.8 release

ChIPseeker 1.17.2

• add flip_minor_strand parameter in getTagMatrix (2018-08-10, Fri)
• should set to FALSE if windows if not symetric

ChIPseeker 1.17.1

• fixed issue of vennpie by adding pseudo-count [phone], Sat)
• https://www.biostars.org/p/326456/

ChIPseeker 1.16.0

• Bioconductor 3.7 release

ChIPseeker 1.15.4

• If the required input is a named list and user input a list without name, set the name automatically and throw warning msg instead of error <2018-03-14, Wed>
  • https://support.bioconductor.org/p/106903/#106936
• change plotAvgProf's default y label <2018-03-14, Wed>
  • https://github.com/GuangchuangYu/ChIPseeker/issues/76
• plotAnnoBar now visualize barplot according to the order of input list (y-axis) (2018-02-27, Tue)
  • https://github.com/GuangchuangYu/ChIPseeker/issues/73
• follow renaming of RangesList class -> IntegerRangesList in IRanges v2.13.12
  • https://github.com/GuangchuangYu/ChIPseeker/commit/b62d7922fb61e58620bbb685e4def4fb863c8e81

ChIPseeker 1.15.3

• options to ignore '1st exon', '1st intron', 'downstream' and promoter subcategory when summarizing result and visualization (2018-01-09, Tue)
  • https://support.bioconductor.org/p/104676/#104689
• throw msg of 'file not found and skip' when requested url is not available when downloading BED file from GEO (2017-12-28, Thu)
  • https://support.bioconductor.org/p/104491/#104507
• bug fixed of getGene (2017-12-27, Wed)

ChIPseeker documentation built on March 6, 2021, 2 a.m.