DA_pairwise: Run differential analysis in Pairwise mode
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
View source: R/diff_analysis_gene_set_enrichment.R
Description
Run differential analysis in Pairwise mode
Usage
1
DA_pairwise(affectation, nclust, counts, method, feature, block)
Arguments
affectation
An annotation data.frame with cell_cluster and cell_id
columns
nclust
Number of clusters
counts
Count matrix
method
DA method, Wilcoxon or edgeR
feature
Feature data.frame
block
Blocking feature
Value
A list of results, groups compared and references
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
View source: R/diff_analysis_gene_set_enrichment.R
Description
Run differential analysis in Pairwise mode
Usage
1 | DA_pairwise(affectation, nclust, counts, method, feature, block)
|
Arguments
affectation |
An annotation data.frame with cell_cluster and cell_id columns |
nclust |
Number of clusters |
counts |
Count matrix |
method |
DA method, Wilcoxon or edgeR |
feature |
Feature data.frame |
block |
Blocking feature |
Value
A list of results, groups compared and references
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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