Description Usage Arguments Value
View source: R/diff_analysis_gene_set_enrichment.R
Filter genes based on peak calling refined annotation
1 2 3 4 5 6 7 | filter_genes_with_refined_peak_annotation(
refined_annotation,
peak_distance,
signific,
over,
under
)
|
refined_annotation |
A data.frame containing each gene distance to real peak |
peak_distance |
Minimum distance to an existing peak to accept a given gene |
signific |
Indexes of all significantly differential genes |
over |
Indexes of all significantly overexpressed genes |
under |
Indexes of all significantly underexpressed genes |
List of significantly differential, overexpressed and underexpressed genes close enough to existing peaks
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