annotation_from_merged_peaks: Find nearest peaks of each gene and return refined annotation
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
Description
Find nearest peaks of each gene and return refined annotation
Usage
1
annotation_from_merged_peaks(scExp, merged_peaks, geneTSS_annotation)
Arguments
scExp
A SingleCellExperiment object
merged_peaks
A list of GRanges object containing the merged peaks
geneTSS_annotation
A GRanges object with reference genes
Value
A data.frame with refined annotation
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
Description
Find nearest peaks of each gene and return refined annotation
Usage
1 | annotation_from_merged_peaks(scExp, merged_peaks, geneTSS_annotation)
|
Arguments
scExp |
A SingleCellExperiment object |
merged_peaks |
A list of GRanges object containing the merged peaks |
geneTSS_annotation |
A GRanges object with reference genes |
Value
A data.frame with refined annotation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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