call_macs2_merge_peaks: Calling MACS2 peak caller and merging resulting peaks

In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App

Description

Calling MACS2 peak caller and merging resulting peaks

Usage

call_macs2_merge_peaks(affectation, odir, p.value, ref, peak_distance_to_merge)

Arguments

affectation	Annotation data.frame with cell cluster and cell id information
odir	Output directory to write MACS2 output
p.value	P value to detect peaks, passed to MACS2
ref	Reference genome
peak_distance_to_merge	Distance to merge peaks

Value

A list of merged GRanges peaks

ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.