beds_to_matrix_indexes: Count bed files on interval to create count indexes
In ChromSCape: Analysis of single-cell epigenomics datasets with a Shiny App
Description
Usage
Arguments
Value
View source: R/preprocessing_filtering_reduction.R
Description
Count bed files on interval to create count indexes
Usage
1
beds_to_matrix_indexes(files_dir, which)
Arguments
files_dir
Directory containing the single cell BAM files
which
Genomic Range on which to count
Value
A list containing a "feature index" data.frame and a
names of cells as vector both used to form the sparse matrix
ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.
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Description Usage Arguments Value
View source: R/preprocessing_filtering_reduction.R
Description
Count bed files on interval to create count indexes
Usage
1 | beds_to_matrix_indexes(files_dir, which)
|
Arguments
files_dir |
Directory containing the single cell BAM files |
which |
Genomic Range on which to count |
Value
A list containing a "feature index" data.frame and a names of cells as vector both used to form the sparse matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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