define_feature: Define the features on which reads will be counted

Description Usage Arguments Value

View source: R/preprocessing_filtering_reduction.R

Description

Define the features on which reads will be counted

Usage

1
define_feature(ref, peak_file, n_bins, bin_width, geneTSS, aroundTSS)

Arguments

ref

Reference genome

peak_file

A bed file if counting on peaks

n_bins

A number of bins if divinding genome into fixed number of bins

bin_width

A number of bins if divinding genome into fixed width bins

geneTSS

A logical indicating if feature should be counted around genes TSS instead

aroundTSS

Region to take in account around genes TSS

Value

A GRanges object


ChromSCape documentation built on Nov. 8, 2020, 6:57 p.m.