API for DOSE
Disease Ontology Semantic and Enrichment analysis

Global functions
ALLEXTID Source code
DGN_EXTID2PATHID Man page
DGN_PATHID2EXTID Man page
DGN_PATHID2NAME Man page
DO2ALLEG Man page
DO2EG Man page
DOIC Man page
DOLite2EG Man page
DOLiteTerm Man page
DOSE Man page
DOSE-package Man page
DataSet Man page
EG2ALLDO Man page
EG2DO Man page
EG2DOLite Man page
EXTID2NAME Man page Source code
EXTID2TERMID Source code
GSEA_DOSE Source code
GSEA_fgsea Source code
GSEA_internal Man page Source code
NCG_EXTID2PATHID Man page
NCG_PATHID2EXTID Man page
NCG_PATHID2NAME Man page
TERM2NAME Source code
TERMID2EXTID Source code
VDGN_EXTID2PATHID Man page
VDGN_PATHID2EXTID Man page
VDGN_PATHID2NAME Man page
as.data.frame.enrichResult Source code
as.data.frame.gseaResult Source code
barplot.enrichResult Man page Source code
build_Anno Source code
build_dodata Source code
calculate_qvalue Source code
check_gene_id Source code
clusterSim Man page Source code
cnetplot Man page
cnetplot,enrichResult-method Man page
cnetplot,gseaResult-method Man page
cnetplot.enrichResult Source code
cnetplot_internal Man page Source code
color_scale Source code
computeIC Man page Source code
dim.enrichResult Source code
doSim Man page Source code
dodata Source code
dotbl Man page
dotplot Man page
dotplot,enrichResult,ANY-method Man page
dotplot,enrichResult-method Man page
dotplot,gseaResult,ANY-method Man page
dotplot,gseaResult-method Man page
dotplot_internal Source code
enrichDGN Man page Source code
enrichDGNv Man page Source code
enrichDO Man page Source code
enrichDisease Source code
enrichMap Man page Source code
enrichNCG Man page Source code
enrichResult-class Man page
enricher_internal Man page Source code
facet_grid Man page
fortify.enrichResult Man page Source code
fortify.gseaResult Source code
fortify.internal Source code
gene2DO Man page Source code
geneID Man page Source code
geneID.enrichResult Source code
geneID.gseaResult Source code
geneInCategory Man page Source code
geneInCategory.enrichResult Source code
geneInCategory.gseaResult Source code
geneList Man page
geneSet_filter Source code
geneSim Man page Source code
get.col.scale Source code
getGeneSet Source code
getIdx Source code
get_DGN_data Source code
get_DO_data Source code
get_NCG_data Source code
get_VDGN_data Source code
get_geneSet_index Source code
get_organism Source code
gsInfo Man page Source code
gseDGN Man page Source code
gseDO Man page Source code
gseDisease Source code
gseNCG Man page Source code
gseaResult-class Man page
gseaScores Source code
gseahResult-class Man page
gseaplot Man page Source code
gsfilter Man page Source code
head.enrichResult Source code
is.sorted Source code
leading_edge Source code
list2graph Man page Source code
mclusterSim Man page Source code
netplot Man page Source code
nitial Source code
onAttach Source code
overlap_ratio Source code
parse_ratio Source code
perm.geneList Source code
perm.gseaEScore Source code
plot Man page Man page
plot,enrichResult,ANY-method Man page
plot,enrichResult-method Man page
plot,gseaResult,ANY-method Man page
plot,gseaResult-method Man page
prepare_relation_df Source code
rebuildAnnoData Man page Source code
rebuildAnnoData.internal Source code
reexports Man page
ridgeplot Man page Source code
scaleNodeColor Man page Source code
setReadable Man page Source code
setting.graph.attributes Man page Source code
show Man page Man page
show,enrichResult-method Man page
show,gseaResult-method Man page
simplot Man page Source code
str_count Source code
str_count_item Source code
summary Man page Man page
summary,enrichResult-method Man page
summary,gseaResult-method Man page
tail.enrichResult Source code
theme_dose Man page Source code
upsetplot Man page
upsetplot,enrichResult,ANY-method Man page
upsetplot,enrichResult-method Man page
upsetplot.enrichResult Source code
DOSE documentation built on Nov. 17, 2017, 12:58 p.m.