Files in DOSE
Disease Ontology Semantic and Enrichment analysis

DESCRIPTION
NAMESPACE
NEWS
README.md
data/DOLiteTerm.rda
data/datalist
data/NCG_PATHID2EXTID.rda
data/geneList.rda
data/DOIC.rda
data/NCG_EXTID2PATHID.rda
data/DO2EG.rda
data/EG2ALLDO.rda
data/DGN_PATHID2NAME.rda
data/DOLite2EG.rda
data/dotbl.rda
data/NCG_PATHID2NAME.rda
data/VDGN_PATHID2NAME.rda
data/VDGN_PATHID2EXTID.rda
data/DO2ALLEG.rda
data/DGN_PATHID2EXTID.rda
data/VDGN_EXTID2PATHID.rda
data/EG2DO.rda
data/DGN_EXTID2PATHID.rda
data/EG2DOLite.rda
R/zzz.R R/enrichDO.R R/enrichResult.R R/enrichNCG.R R/build_Anno.R R/gseAnalyzer.R R/DOSE-package.R R/gsfilter.R R/enrichMap.R R/cnetplot.R R/dotplot.R R/mclusterSim.R R/00-AllClasses.R R/enricher_internal.R R/enrichDGN.R R/gseaResult.R R/enrichDGNv.R R/enrichDisease.R R/utilities.R R/barplot.R R/doSim.R R/simplot.R R/ridgeplot.R R/accessor.R R/upsetplot.R R/method-fortify.R R/AllGenerics.R R/gsea.R R/clusterSim.R R/geneSim.R tests/testthat.R tests/testthat/test-doSim.R tests/testthat/test-geneSim.R tests/testthat/test-gene2DO.R
build/vignette.rds
site_src/index.Rmd
site_src/config.toml
site_src/content/index.rmd
site_src/content/index.html
site_src/content/documentation/index.rmd
site_src/content/documentation/index.html
site_src/content/featured-articles/index.rmd
site_src/content/featured-articles/index.html
man/gseNCG.Rd man/cnetplot-methods.Rd man/gsInfo.Rd man/gsfilter.Rd man/ridgeplot.Rd man/geneInCategory.Rd man/geneSim.Rd man/theme_dose.Rd man/enrichDO.Rd man/setting.graph.attributes.Rd man/enrichDGNv.Rd man/dotplot-methods.Rd man/mclusterSim.Rd man/fortify.enrichResult.Rd man/gseDO.Rd man/gseaplot.Rd man/enrichResult-class.Rd man/enrichDGN.Rd man/plot-methods.Rd man/GSEA_internal.Rd man/computeIC.Rd man/list2graph.Rd man/cnetplot_internal.Rd man/enrichNCG.Rd man/show-methods.Rd man/enricher_internal.Rd man/EXTID2NAME.Rd man/summary-methods.Rd man/doSim.Rd man/reexports.Rd man/barplot.enrichResult.Rd man/rebuildAnnoData.Rd man/gene2DO.Rd man/geneID.Rd man/scaleNodeColor.Rd man/upsetplot-methods.Rd man/clusterSim.Rd man/gseaResult-class.Rd man/setReadable.Rd man/enrichMap.Rd man/DOSE-package.Rd man/DataSet.Rd man/simplot.Rd man/netplot.Rd man/gseDGN.Rd
inst/CITATION
inst/extdata/build_NCG_Anno.R inst/extdata/build_DGN_Anno.R inst/doc/GSEA.R
inst/doc/DOSE.html
inst/doc/enrichmentAnalysis.html
inst/doc/DOSE.Rmd inst/doc/GSEA.Rmd inst/doc/DOSE.R inst/doc/enrichmentAnalysis.R inst/doc/enrichmentAnalysis.Rmd inst/doc/semanticAnalysis.Rmd
inst/doc/GSEA.html
inst/doc/semanticAnalysis.R
inst/doc/semanticAnalysis.html
vignettes/DOSE.Rmd vignettes/GSEA.Rmd vignettes/semanticAnalysis.Rmd
vignettes/nature.csl
vignettes/enrichmentAnalysis.Rmd
vignettes/DOSE.bib
vignettes/figures/enrichMap_gseNCG.png
vignettes/figures/cnet_enrichDO.png
vignettes/figures/cnet_gseNCG.png
vignettes/figures/enrichMap_enrichDO.png
vignettes/figures/upsetplot_enrichDO.png
DOSE documentation built on Nov. 17, 2017, 12:58 p.m.