Man pages for DOSE
Disease Ontology Semantic and Enrichment analysis

barplot.enrichResultbarplot
clusterSimclusterSim
cnetplot_internalcnetplot_internal
cnetplot-methodscnetplot method
computeICcompute information content
DataSetDatasets
DOSE-packageDisease Ontology Semantic and Enrichment analysis Implemented...
doSimdoSim
dotplot-methodsdotplot method
enrichDGNEnrichment analysis based on the DisGeNET (<URL:...
enrichDGNvenrichDGN
enrichDODO Enrichment Analysis
enricher_internalenrich.internal
enrichMapenrichMap
enrichNCGenrichNCG
enrichResult-classClass "enrichResult" This class represents the result of...
EXTID2NAMEEXTID2NAME
fortify.enrichResultfortify
gene2DOconvert Gene ID to DO Terms
geneIDgeneID generic
geneInCategorygeneInCategory generic
geneSimgeneSim
GSEA_internalGSEA_internal
gseaplotvisualize analyzing result of GSEA
gseaResult-classClass "gseaResult" This class represents the result of GSEA...
gseDGNDisGeNET Gene Set Enrichment Analysis
gseDODO Gene Set Enrichment Analysis
gseNCGNCG Gene Set Enrichment Analysis
gsfiltergsfilter
gsInfogsInfo
list2graphconvert gene IDs to igraph object
mclusterSimmclusterSim
netplotnetplot
plot-methodsplot method
rebuildAnnoDatarebuiding annotation data
reexportsObjects exported from other packages
ridgeplotridgeplot
scaleNodeColorscaleNodeColor
setReadablesetReadable
setting.graph.attributessetting.graph.attributes
show-methodsshow method
simplotsimplot
summary-methodssummary method
theme_dosetheme_dose
upsetplot-methodsupsetplot method
DOSE documentation built on Nov. 17, 2017, 12:58 p.m.