geneSim: geneSim
In DOSE: Disease Ontology Semantic and Enrichment analysis
Description
Usage
Arguments
Details
Value
Author(s)
Description
measuring similarities bewteen two gene vectors.
Usage
1
Arguments
geneID1
entrez gene vector
geneID2
entrez gene vector
measure
one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".
combine
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.
Details
provide two entrez gene vectors, this function will calculate their similarity.
Value
score matrix
Author(s)
Guangchuang Yu http://ygc.name
DOSE documentation built on Nov. 8, 2020, 7:48 p.m.
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Description Usage Arguments Details Value Author(s)
Description
measuring similarities bewteen two gene vectors.
Usage
1 |
Arguments
geneID1 |
entrez gene vector |
geneID2 |
entrez gene vector |
measure |
one of "Wang", "Resnik", "Rel", "Jiang", and "Lin". |
combine |
One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein. |
Details
provide two entrez gene vectors, this function will calculate their similarity.
Value
score matrix
Author(s)
Guangchuang Yu http://ygc.name
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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