geneSim: geneSim

Description Usage Arguments Details Value Author(s)

View source: R/geneSim.R

Description

measuring similarities bewteen two gene vectors.

Usage

1
geneSim(geneID1, geneID2 = NULL, measure = "Wang", combine = "BMA")

Arguments

geneID1

entrez gene vector

geneID2

entrez gene vector

measure

one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".

combine

One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

Details

provide two entrez gene vectors, this function will calculate their similarity.

Value

score matrix

Author(s)

Guangchuang Yu http://ygc.name


DOSE documentation built on May 31, 2017, 11:54 a.m.