Files in DOSE
Disease Ontology Semantic and Enrichment analysis
NEWS.md
README.md
DOSE documentation built on Nov. 8, 2020, 7:48 p.m.
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
data/DOIC.rda
data/DO2ALLEG.rda
data/EG2DOLite.rda
data/DOLiteTerm.rda
data/DGN_PATHID2EXTID.rda
data/DOLite2EG.rda
data/dotbl.rda
data/NCG_PATHID2EXTID.rda
data/NCG_EXTID2PATHID.rda
data/datalist
data/EG2ALLDO.rda
data/EG2DO.rda
data/DO2EG.rda
data/VDGN_PATHID2NAME.rda
data/VDGN_PATHID2EXTID.rda
data/DGN_PATHID2NAME.rda
data/DGN_EXTID2PATHID.rda
data/VDGN_EXTID2PATHID.rda
data/NCG_PATHID2NAME.rda
data/geneList.rda
R/enrichNCG.R
R/gseaResult.R
R/build_Anno.R
R/geneSim.R
R/enrichDO.R
R/AllGenerics.R
R/mclusterSim.R
R/DOSE-package.R
R/gsfilter.R
R/enrichDGN.R
R/utilities.R
R/enricher_internal.R
R/00-AllClasses.R
R/gseAnalyzer.R
R/simplot.R
R/enrichDisease.R
R/zzz.R
R/setReadable.R
R/clusterSim.R
R/enrichDGNv.R
R/doSim.R
R/parse_ratio.R
R/accessor.R
R/gsea.R
R/print.R
vignettes/DOSE.Rmd
man/enrichDGNv.Rd
man/clusterSim.Rd
man/show-methods.Rd
man/enrichDGN.Rd
man/geneSim.Rd
man/enrichDO.Rd
man/computeIC.Rd
man/rebuildAnnoData.Rd
man/DataSet.Rd
man/reexports.Rd
man/parse_ratio.Rd
man/GSEA_internal.Rd
man/gsfilter.Rd
man/mclusterSim.Rd
man/EXTID2NAME.Rd
man/theme_dose.Rd
man/DOSE-package.Rd
man/gseNCG.Rd
man/enrichNCG.Rd
man/simplot.Rd
man/enricher_internal.Rd
man/setReadable.Rd
man/compareClusterResult-class.Rd
man/doSim.Rd
man/geneID.Rd
man/enrichResult-class.Rd
man/gseDGN.Rd
man/gseDO.Rd
man/geneInCategory.Rd
man/gene2DO.Rd
man/summary-methods.Rd
man/gseaResult-class.Rd
tests/testthat.R
tests/testthat/test-gene2DO.R
tests/testthat/test-geneSim.R
tests/testthat/test-doSim.R
inst/CITATION
inst/doc/DOSE.R
inst/doc/DOSE.Rmd
inst/doc/DOSE.html
inst/extdata/build_NCG_Anno.R
inst/extdata/build_DGN_Anno.R
