| Dm.tnumber | The amount of thymines in the cDNA of each transcript of... |
| Doelken2008 | Mus Musculus and Homo Sapiens DTA experiment from Doelken et... |
| DTA.dynamic.estimate | Estimation of synthesis and decay rates upon perturbation |
| DTA.dynamic.generate | Simulation of DTA experiments upon perturbation |
| DTA.estimate | Estimation of synthesis and decay rates |
| DTA.generate | Simulation of DTA experiments |
| DTA.map.it | Mapping function to switch between different identifiers. |
| DTA.normalize | cDTA normalization procedure. |
| DTA-package | Dynamic Transcriptome Analysis |
| DTA.phenomat | Create a phenomat that suits your experiment. |
| DTA.plot.it | Plots in any format and any quality |
| Hs.datamat | Gene expression profiles of the Homo Sapiens DTA experiment... |
| Hs.enst2ensg | Mapping of Homo Sapiens gene and transcript identifiers. |
| Hs.phenomat | Design of the Homo Sapiens DTA experiment from Doelken et al. |
| Hs.reliable | Gene identifiers valid for parameter estimation from the Homo... |
| Hs.tnumber | The amount of thymines in the cDNA of each transcript of Homo... |
| Miller2011 | Saccharomyces Cerevisiae wild-type DTA experiment from Miller... |
| Miller2011dynamic | Saccharomyces Cerevisiae salt stress DTA experiment from... |
| Mm.datamat | Gene expression profiles of the Mus Musculus DTA experiment... |
| Mm.enst2ensg | Mapping of Mus Musculus gene and transcript identifiers. |
| Mm.phenomat | Design of the Mus Musculus DTA experiment from Doelken et al. |
| Mm.reliable | Gene identifiers valid for parameter estimation from the Mus... |
| Mm.tnumber | The amount of thymines in the cDNA of each transcript of Mus... |
| Pol.phenomat | Design of the Saccharomyces Cerevisiae rpb1-N488D (Slow... |
| Raw.datamat | Gene expression profiles of the Saccharomyces Cerevisiae... |
| Sc.affy2ensg | Mapping of SaccharomycesCerevisiae Affymetrix Yeast 2.0 and... |
| Sc.datamat | Gene expression profiles of the Saccharomyces Cerevisiae... |
| Sc.datamat.dynamic | Gene expression profiles of the Saccharomyces Cerevisiae salt... |
| Sc.ensg.reliable | Gene identifiers valid for parameter estimation from the... |
| Sc.phenomat | Design of the Saccharomyces Cerevisiae wild-type DTA... |
| Sc.phenomat.dynamic | Design of the Saccharomyces Cerevisiae salt stress DTA... |
| Sc.reliable | Gene identifiers valid for parameter estimation from the... |
| Sc.reliable.dynamic | Gene identifiers valid for parameter estimation from the... |
| Sc.ribig.ensg | Ribosome biogenesis genes. |
| Sc.rpg.ensg | Ribosomal protein genes. |
| Sc.stress.ensg | ISA stress module. |
| Sc.tf.ensg | Transcription factors. |
| Sc.tnumber | The amount of thymines in the cDNA of each transcript of... |
| Sp.affy.reliable | Gene identifiers valid for cDTA normalization from the... |
| Sp.tnumber | The amount of thymines in the cDNA of each transcript of... |
| Sun2011 | Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and... |
| tls | Weighted Total Least Square Regression. |
| Wt.phenomat | Design of the Saccharomyces Cerevisiae wild-type cDTA... |
