Man pages for DTA
Dynamic Transcriptome Analysis

Dm.tnumberThe amount of thymines in the cDNA of each transcript of...
Doelken2008Mus Musculus and Homo Sapiens DTA experiment from Doelken et...
DTA.dynamic.estimateEstimation of synthesis and decay rates upon perturbation
DTA.dynamic.generateSimulation of DTA experiments upon perturbation
DTA.estimateEstimation of synthesis and decay rates
DTA.generateSimulation of DTA experiments
DTA.map.itMapping function to switch between different identifiers.
DTA.normalizecDTA normalization procedure.
DTA-packageDynamic Transcriptome Analysis
DTA.phenomatCreate a phenomat that suits your experiment.
DTA.plot.itPlots in any format and any quality
Hs.datamatGene expression profiles of the Homo Sapiens DTA experiment...
Hs.enst2ensgMapping of Homo Sapiens gene and transcript identifiers.
Hs.phenomatDesign of the Homo Sapiens DTA experiment from Doelken et al.
Hs.reliableGene identifiers valid for parameter estimation from the Homo...
Hs.tnumberThe amount of thymines in the cDNA of each transcript of Homo...
Miller2011Saccharomyces Cerevisiae wild-type DTA experiment from Miller...
Miller2011dynamicSaccharomyces Cerevisiae salt stress DTA experiment from...
Mm.datamatGene expression profiles of the Mus Musculus DTA experiment...
Mm.enst2ensgMapping of Mus Musculus gene and transcript identifiers.
Mm.phenomatDesign of the Mus Musculus DTA experiment from Doelken et al.
Mm.reliableGene identifiers valid for parameter estimation from the Mus...
Mm.tnumberThe amount of thymines in the cDNA of each transcript of Mus...
Pol.phenomatDesign of the Saccharomyces Cerevisiae rpb1-N488D (Slow...
Raw.datamatGene expression profiles of the Saccharomyces Cerevisiae...
Sc.affy2ensgMapping of SaccharomycesCerevisiae Affymetrix Yeast 2.0 and...
Sc.datamatGene expression profiles of the Saccharomyces Cerevisiae...
Sc.datamat.dynamicGene expression profiles of the Saccharomyces Cerevisiae salt...
Sc.ensg.reliableGene identifiers valid for parameter estimation from the...
Sc.phenomatDesign of the Saccharomyces Cerevisiae wild-type DTA...
Sc.phenomat.dynamicDesign of the Saccharomyces Cerevisiae salt stress DTA...
Sc.reliableGene identifiers valid for parameter estimation from the...
Sc.reliable.dynamicGene identifiers valid for parameter estimation from the...
Sc.ribig.ensgRibosome biogenesis genes.
Sc.rpg.ensgRibosomal protein genes.
Sc.stress.ensgISA stress module.
Sc.tf.ensgTranscription factors.
Sc.tnumberThe amount of thymines in the cDNA of each transcript of...
Sp.affy.reliableGene identifiers valid for cDTA normalization from the...
Sp.tnumberThe amount of thymines in the cDNA of each transcript of...
Sun2011Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and...
tlsWeighted Total Least Square Regression.
Wt.phenomatDesign of the Saccharomyces Cerevisiae wild-type cDTA...
DTA documentation built on May 2, 2018, 4:40 a.m.