DTA.normalize: cDTA normalization procedure.
In DTA: Dynamic Transcriptome Analysis

Description Usage Arguments Author(s) References Examples

DTA.normalize can normalize expression values from a certain species to the median of values from a reference species.

1	DTA.normalize(mat,reliable = NULL,logscale = FALSE,protocol = FALSE,center = FALSE)

`mat`	Expression matrix.
`reliable`	The rows to be used, i.e. identifiers of the reference species to normalize on.
`logscale`	Is the matrix in log-scale ?
`protocol`	Should a protocol be printed ?
`center`	Should the center be 0 (log-scale) or 1 (absolute scale). Otherwise the median of the medians is taken.

Bjoern Schwalb schwalb@lmb.uni-muenchen.de

M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review. B. Schwalb, B. Zacher, S. Duemcke, D. Martin, P. Cramer, A. Tresch. Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA/cDTA). Bioinformatics.

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### see vignette examples or reference:
### B. Schwalb, B. Zacher, S. Duemcke, D. Martin, P. Cramer, A. Tresch.
### Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA/cDTA). Bioinformatics, in revision.

DTA documentation built on Nov. 8, 2020, 7:22 p.m.