Hs.phenomat: Design of the Homo Sapiens DTA experiment from Doelken et al.
In DTA: Dynamic Transcriptome Analysis
Description
Usage
Format
Source
Description
The phenotype matrix Hs.phenomat contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time and the replicate number.
Usage
1
Format
The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, fraction column), the labeling time (time,timeframe column) and the replicate number (nr column). Rows in this matrix represent the individual experiments.
Source
Doelken, L., Ruzsics, Z., Raedle, B., Friedel, C. C., Zimmer, R., Mages, J., Hoffmann, R., Dickinson, P., Forster, T., Ghazal, P., & Koszinowski, U. H. (2008). High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), 1959-1972.
DTA documentation built on Nov. 8, 2020, 7:22 p.m.
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Description Usage Format Source
Description
The phenotype matrix Hs.phenomat contains information about the experimental design. It is comprised of the filename, the type of RNA fraction measured (T, U or L), the labeling time and the replicate number.
Usage
1 |
Format
The phenomat is a matrix comprised of the file name, the type of RNA fraction mesasured (T, U or L, fraction column), the labeling time (time,timeframe column) and the replicate number (nr column). Rows in this matrix represent the individual experiments.
Source
Doelken, L., Ruzsics, Z., Raedle, B., Friedel, C. C., Zimmer, R., Mages, J., Hoffmann, R., Dickinson, P., Forster, T., Ghazal, P., & Koszinowski, U. H. (2008). High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), 1959-1972.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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