DTA.phenomat: Create a phenomat that suits your experiment.
In DTA: Dynamic Transcriptome Analysis

Description Usage Arguments Value Author(s) Examples

DTA.phenomat creates a phenomat for a given experimental design, i.e. used labeling times.

1	DTA.phenomat(timepoints, timecourse = NULL)

`timepoints`	The respective labeling times of the measured samples.
`timecourse`	Vector giving the order for timecourse DTA data.

A matrix, containing the design of the experiment. Columns are name, fraction (U=unlabebeld, L=labeled, T=total), time and nr (=replicate number). Rows represent individual experiments. For timecourse data, an additional column of the order of the underlying timecourse data can be added via timecourse.

Bjoern Schwalb schwalb@lmb.uni-muenchen.de

### phenomat for 2 replicates of 6 and 12 min labeling duration resp.
DTA.phenomat(c(6,12))

### phenomat for three adjacent timepoints measured in 2 replicates 
DTA.phenomat(rep(6,6),timecourse = 1:3)