Sun2011: Saccharomyces Cerevisiae rpb1-N488D (Slow Polymerase) and...
In DTA: Dynamic Transcriptome Analysis
Description
Usage
Format
Source
Description
R object contains all relevant *.RData files needed for the DTA.estimate function. For example, see Schwalb et al.
Usage
1
Format
R object contains the following *.RData files:
Raw.datamat
Sp.affy.reliable
Sc.affy2ensg
Wt.phenomat
Pol.phenomat
Sc.ensg.reliable
Sc.tnumber
Source
M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review.
B. Schwalb, B. Zacher, S. Duemcke, D. Martin, P. Cramer, A. Tresch. Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA/cDTA). Bioinformatics.
E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Graef, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kaehaeri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta-
Vidal, J. Vogel, S. White, C.Woodwark, and T. J. Hubbard. Ensembl 2006. Nucleic acids research, 34(Database issue), January 2006.
DTA documentation built on Nov. 8, 2020, 7:22 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Source
Description
R object contains all relevant *.RData files needed for the DTA.estimate function. For example, see Schwalb et al.
Usage
1 |
Format
R object contains the following *.RData files:
Raw.datamat
Sp.affy.reliable
Sc.affy2ensg
Wt.phenomat
Pol.phenomat
Sc.ensg.reliable
Sc.tnumber
Source
M. Sun, B. Schwalb, D. Schulz, N. Pirkl, L. Lariviere, K. Maier, A. Tresch, P. Cramer. Mutual feedback between mRNA synthesis and degradation buffers transcript levels in a eukaryote. Under review. B. Schwalb, B. Zacher, S. Duemcke, D. Martin, P. Cramer, A. Tresch. Measurement of genome-wide RNA synthesis and decay rates with Dynamic Transcriptome Analysis (DTA/cDTA). Bioinformatics. E. Birney, D. Andrews, M. Caccamo, Y. Chen, L. Clarke, G. Coates, T. Cox, F. Cunningham, V. Curwen, T. Cutts, T. Down, R. Durbin, X. M. Fernandez-Suarez, P. Flicek, S. Graef, M. Hammond, J. Herrero, K. Howe, V. Iyer, K. Jekosch, A. Kaehaeri, A. Kasprzyk, D. Keefe, F. Kokocinski, E. Kulesha, D. London, I. Longden, C. Melsopp, P. Meidl, B. Overduin, A. Parker, G. Proctor, A. Prlic, M. Rae, D. Rios, S. Redmond, M. Schuster, I. Sealy, S. Searle, J. Severin, G. Slater, D. Smedley, J. Smith, A. Stabenau, J. Stalker, S. Trevanion, A. Ureta- Vidal, J. Vogel, S. White, C.Woodwark, and T. J. Hubbard. Ensembl 2006. Nucleic acids research, 34(Database issue), January 2006.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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