Likefun: Likelihood Function of the NB-Beta Model

Description Usage Arguments Value Author(s) References Examples

View source: R/Likefun.R

Description

'Likefun' specifies the Likelihood Function of the NB-Beta Model.

Usage

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Likefun(ParamPool, InputPool)

Arguments

ParamPool

The parameters that will be estimated in EM.

InputPool

The control parameters that will not be estimated in EM.

Value

The function will return the log-likelihood.

Author(s)

Ning Leng

References

Ning Leng, John A. Dawson, James A. Thomson, Victor Ruotti, Anna I. Rissman, Bart M.G. Smits, Jill D. Haag, Michael N. Gould, Ron M. Stewart, and Christina Kendziorski. EBSeq: An empirical Bayes hierarchical model for inference in RNA-seq experiments. Bioinformatics (2013)

Examples

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#x1 = c(.6,.7,.3)
#Input = matrix(rnorm(100,100,1), ncol=10)
#RIn = matrix(rnorm(100,200,1), ncol=10)
#InputPool = list(Input[,1:5], Input[,6:10], Input,
#	rep(.1,100), 1, RIn, RIn[,1:5], RIn[,6:10], 100) 
#Likefun(x1, InputPool)

EBSeq documentation built on May 31, 2017, 1:26 p.m.

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